Background and Aims: Spatial distribution of soil nutrient (soil heterogeneity) and availability have strong effects on above- and below ground plant functional traits. Although there is ample evidence on the tight links between functional traits and ecosystem functioning, the role played by soil heterogeneity and availability as modulators of such relationship is poorly known.Methods: We conducted a factorial experiment in microcosms containing grasses, legumes and non-legume forbs communities differing in composition to evaluate how soil heterogeneity and availability (50 and 100 mg N) affects the links between traits and ecosystem functioning. Community-aggregated specific leaf area (SLAgg) and specific root length (SRLagg) were measured as both relevant response traits to soil heterogeneity and availability, and significant effect traits affecting ecosystem functioning (i.e., belowground biomass, beta-glucosidase and acid phosphate activities, and in situ N availability rate). Results: SRLagg was negatively and significantly associated to beta-glucosidase, phosphatase and N availability rate in the high nutrient availability and heterogeneous distribution scenario. We found a significant negative relationship between SLAagg and availability rate of mineral-N under low nutrient availability conditions. Conclusions: Soil heterogeneity modulated the effects of both traits and nutrient availability on ecosystem functioning. Specific root length was the key trait associated with soil nutrient cycling and belowground biomass in contrasted heterogeneous soil conditions. The inclusion of soil heterogeneity into the trait-based response-effect framework may help to scale from plant communities to the ecosystem level.